Rafel Riudavets Puig
Posts by Rafel Riudavets Puig:
Provide expertise and methods on motif enrichment (iRegulon, i-cisTarget), motif-2-TF mapping, and collections of position weight matrices.
Biocuration of ncRNA networks that regulate gene expression,
Development of related standards and PSI-MI Controlled Vocabulary terms
I lead the team which works on software development and we are interested in protein-protein interactions in transcriptional regulation and in transcription-related function annotation. The curation of gene regulation knowledge is one of the basics dependencies for our computational tools.
To the GREEKC network, we can offer a perspective of users of ontologies and vocabularies. We are interested in creating use cases. We are interested in exploring tools interoperability. One of our main research interests is how to efficiently integrate changes and new versions of ontologies and vocabularies with models developed by supervised machine learning approaches. I believe that the GREEKC will enable fruitful collaborations in this domain.
Implement support of causality information for molecular interactions (MITAB 2.8 data format) in the PSICQUIC web service platform.