Position:
Email:
marcio.l.acencio@ntnu.no
Address:
Department of Clinical and Molecular Medicine. PO Box 8905 MTFS, NO-7491, Trondheim, Norway
Country:
Area of Expertise:
- Biocuration
- Transcriptional Regulatory Interactions
- Machine Learning
- Network Analysis in Systems Biology
Link to Research Webpage(s):
- https://www.ntnu.edu/employees/marcio.l.acencio
- https://www.researchgate.net/profile/Marcio_Acencio
Link to Resource Webpage(s):
- http://www.lbbc.ibb.unesp.br/htri
Role in the COST action
Role in the Project:
Your Role in Working Group(s):
Contribution to the Project
Biocuration activities related to the identification of mammalian sequence-specific DNA binding transcription factors (DbTFs) based on Gene Ontology (GO) Molecular Function (MF) terms;
Refactoring of the structure of the GO MF Ontology specifically related to
transcription factor activity (in collaboration with Astrid Lægreid and GO members)
Refactoring of the PSI-MI Controlled Vocabulary to add new terms describing transcription-related causal interactions for the CausalTAB (PSI-MITAB 2.8) (preprint paper at bioRxiv here)
Revamping of the TFCheckpoint database (still under construction; new version will be soon available)
Text-mining of DbTF-TG causal interactions from biomedical literature (in collaboration with Martin Krallinger from the Spanish National Cancer Research Centre (CNIO) and Barcelona Supercomputing Center (BSC)
Location:
Biocuration activities related to the identification of mammalian sequence-specific DNA binding transcription factors (DbTFs) based on Gene Ontology (GO) Molecular Function (MF) terms;
Refactoring of the structure of the GO MF Ontology specifically related to
transcription factor activity (in collaboration with Astrid Lægreid and GO members)
Refactoring of the PSI-MI Controlled Vocabulary to add new terms describing transcription-related causal interactions for the CausalTAB (PSI-MITAB 2.8) (preprint paper at bioRxiv here)
Revamping of the TFCheckpoint database (still under construction; new version will be soon available)
Text-mining of DbTF-TG causal interactions from biomedical literature (in collaboration with Martin Krallinger from the Spanish National Cancer Research Centre (CNIO) and Barcelona Supercomputing Center (BSC)